The CompMicroLab @ UmU

Making sense of microbial (meta)genomic data since 2023 🧬

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news

Feb 18, 2025 ANI are you ok? The PyOrthoANI, PyFastANI, and Pyskani preprint is out! 🐍
Feb 15, 2025 ATAC of the telomeres! Telomemore is published in Nucleic Acids Research 🧬
Feb 12, 2025 Science speedrun! Three CompMicroLab students defend their 10-week projects 🚀
Jul 23, 2024 Calling all Bacillus cereus group researchers! Participate in the BTyperDB project! 📣
Jun 10, 2024 ConGRADulations! Four CompMicroLab students defend their Master's/undergrad projects 🎓

selected publications

  1. PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity
    Martin Larralde, Georg Zeller, and Laura M Carroll
    bioRxiv, 2025
  2. Telomemore enables single-cell analysis of cell cycle and chromatin condensation
    Iryna Yakovenko, Ionut Sebastian Mihai, Martin Selinger, and 7 more authors
    Nucleic Acids Research, Jan 2025
  3. A community-curated, global atlas of Bacillus cereus sensu lato genomes for epidemiological surveillance
    Vignesh Ramnath, Martin Larralde, Pedro Menchik, and 14 more authors
    bioRxiv, Jan 2023
  4. Artificial intelligence for natural product drug discovery
    Michael W Mullowney, Katherine R Duncan, Somayah S Elsayed, and 8 more authors
    Nature Reviews Drug Discovery, Jan 2023
  5. A multidrug-resistant Salmonella enterica Typhimurium DT104 complex lineage circulating among humans and cattle in the USA lost the ability to produce pertussis-like toxin ArtAB
    Laura M Carroll, Nicolo Piacenza, Rachel A Cheng, and 2 more authors
    Microbial Genomics, Jan 2023