The CompMicroLab @ UmU

Making sense of microbial (meta)genomic data since 2023 🧬

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news

Jun 23, 2025 All the single cells! Our single-cell metagenomic methods preprint is out! 🫧
Jun 10, 2025 Build ALL the trees! Two CompMicroLab Master's students successfully complete their projects! 🌲
May 20, 2025 Clustering clusters of clusters! The IGUA preprint is out! 🦎
Apr 17, 2025 Look at alllll thoooose chickens! The Salmonella Minnesota preprint is out! 🐓
Feb 18, 2025 ANI are you ok? The PyOrthoANI, PyFastANI, and Pyskani preprint is out! 🐍

selected publications

  1. Scalable single-cell metagenomic analysis with Bascet and Zorn
    Hadrien Gourlé, Iryna Yakovenko, Jyoti Verma, and 9 more authors
    bioRxiv, 2025
  2. Fast, flexible gene cluster family delineation with IGUA
    Martin Larralde, Josefin Blom, Hadrien Gourlé, and 2 more authors
    bioRxiv, 2025
  3. Genomic surveillance of Salmonella enterica serotype Minnesota strains from Brazilian poultry products imported into South Africa
    Vishnu Raghuram, Thendo Mafuna, Vignesh Ramnath, and 5 more authors
    medRxiv, 2025
  4. PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity
    Martin Larralde, Georg Zeller, and Laura M Carroll
    bioRxiv, 2025
  5. Telomemore enables single-cell analysis of cell cycle and chromatin condensation
    Iryna Yakovenko, Ionut Sebastian Mihai, Martin Selinger, and 7 more authors
    Nucleic Acids Research, Jan 2025
  6. A community-curated, global atlas of Bacillus cereus sensu lato genomes for epidemiological surveillance
    Vignesh Ramnath, Martin Larralde, Pedro Menchik, and 14 more authors
    bioRxiv, Jan 2023