The CompMicroLab @ UmU

Making sense of microbial (meta)genomic data since 2023 🧬

vibes.jpg

news

May 20, 2025 Clustering clusters of clusters! The IGUA preprint is out! 🦎
Apr 17, 2025 Look at alllll thoooose chickens! The Salmonella Minnesota preprint is out! 🐓
Feb 18, 2025 ANI are you ok? The PyOrthoANI, PyFastANI, and Pyskani preprint is out! 🐍
Feb 15, 2025 ATAC of the telomeres! Telomemore is published in Nucleic Acids Research 🧬
Feb 12, 2025 Science speedrun! Three CompMicroLab students defend their 10-week projects 🚀

selected publications

  1. Fast, flexible gene cluster family delineation with IGUA
    Martin Larralde, Josefin Blom, Hadrien Gourlé, and 2 more authors
    bioRxiv, 2025
  2. PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity
    Martin Larralde, Georg Zeller, and Laura M Carroll
    bioRxiv, 2025
  3. Telomemore enables single-cell analysis of cell cycle and chromatin condensation
    Iryna Yakovenko, Ionut Sebastian Mihai, Martin Selinger, and 7 more authors
    Nucleic Acids Research, Jan 2025
  4. A community-curated, global atlas of Bacillus cereus sensu lato genomes for epidemiological surveillance
    Vignesh Ramnath, Martin Larralde, Pedro Menchik, and 14 more authors
    bioRxiv, Jan 2023
  5. Artificial intelligence for natural product drug discovery
    Michael W Mullowney, Katherine R Duncan, Somayah S Elsayed, and 8 more authors
    Nature Reviews Drug Discovery, Jan 2023